Shopify suits businesses that want to start selling fast with little technical overhead and are fine with a monthly fee and fixed rules. WooCommerce suits those already on WordPress who want full control in exchange for handling hosting, security and updates. A custom store makes sense when your sales logic is unusual, such as per-customer pricing, B2B quotes or inventory connected to an ERP.
- Shopify: fast to launch, minimal maintenance, monthly fee and paid apps.
- WooCommerce: free WordPress plugin, full control, you look after the server.
- Custom: maximum flexibility for unique business rules, higher upfront investment.
- All three accept Mercado Pago and cash payments at convenience stores with the right integration.
- CFDI invoicing (Mexican e-invoices) can be handled with apps, plugins or a custom integration on any of them.
The short answer by type of business
- Consumer brand selling its own products across Mexico (apparel, coffee, cosmetics): usually Shopify.
- Business that already has a WordPress site with a blog and solid SEO, and wants to add a store: usually WooCommerce.
- Distributor, manufacturer or B2B business with per-customer price lists, credit terms, quotes or thousands of products tied to an internal system: custom, or a heavily extended Shopify or WooCommerce build.
- Business that wants to test whether its product sells online: start with the simplest option, even a WhatsApp Business catalog or a marketplace, and decide later.
These are starting points, not hard rules. If you're still torn between your own store and a marketplace, read Mercado Libre vs. your own store first.
Shopify: sell fast without worrying about the server
Shopify is a monthly subscription platform: they take care of servers, security, updates and checkout. You focus on products, photos and marketing.
- Pros: fast launch, a stable store during peak seasons, a large catalog of themes and apps, a good mobile experience.
- Payments in Mexico: it integrates with Mercado Pago, Stripe, Conekta and other gateways that accept cards, interest-free installments (meses sin intereses, very popular in Mexico) and cash payments. If you use an external gateway instead of Shopify's own payment processor (when it's available for your account), Shopify adds a transaction fee depending on your plan.
- Cons: the subscription and apps add up; many features that seem basic, such as reviews, advanced filters or invoicing, are third-party apps with their own fees. The URL structure has fixed rules and checkout can only be customized within limits.
One detail few people consider: on Shopify, your store depends on you continuing to pay the subscription. Your products and customers can be exported, but the design and apps don't move to another platform. For most brands that's not a problem; for a business that wants its store to be a long-term asset it owns outright, it's worth thinking about.
Shopify also makes it easy to sell on several channels from a single inventory, such as social media and some marketplaces, using connector apps. If your team is small and has no technical person, that simplicity usually outweighs any limitation.
WooCommerce: full control on top of WordPress
WooCommerce is a free plugin that turns a WordPress site into a store. The software costs nothing, but you need hosting, a theme, plugins and someone to maintain it all.
- Pros: complete control over the code, SEO and your data; no extra platform fee per sale; a huge plugin ecosystem, including the official Mercado Pago plugin.
- Cons: security and updates are your responsibility. A neglected WooCommerce store is slow and vulnerable. If that has already happened to you, read what to do if your WordPress site was hacked.
- Hosting: a store with real traffic needs something better than the cheapest shared hosting. We compare the options in shared hosting vs. VPS.
WooCommerce shines when content is central to the sale. If your business depends on people finding you on Google through guides, recipes or spec sheets, having the blog and the store in the same WordPress install simplifies SEO and internal linking. It works just as well for stores with configurable products, bookings or memberships, as long as plugins are chosen carefully and you don't install twenty to solve what one well-built plugin would.
The rule we repeat to every client: a WooCommerce store needs a monthly maintenance plan with tested updates, backups and monitoring. Without it, the savings from not paying a subscription disappear in the first emergency.
Custom store: when the way you sell doesn't fit a template
A custom store is built specifically for your business, for example with Next.js on the front end, a database like Supabase and gateways such as Stripe or Mercado Pago connected directly. It makes sense when:
- Each customer has their own price list, credit terms or volume discounts.
- You sell by quote and purchases are approved before payment.
- Inventory lives in an ERP or point-of-sale system and has to sync in real time across locations.
- You need a customer portal with order history, invoices and recurring orders.
The upfront investment is higher and you need a software development team to maintain it, but you don't pay for apps you don't use or fight with someone else's limits.
There's also a middle ground we use often: a custom front end, very fast and with the brand's exact design, connected to an existing commerce engine that handles payments, inventory and orders. That way you gain flexibility without rebuilding what already works well on other platforms. The decision depends on how much of your operation is truly different from any other store's.
Comparison: Shopify vs. WooCommerce vs. custom
| Criterion | Shopify | WooCommerce | Custom |
|---|---|---|---|
| Time to launch | Short | Short to medium | Medium to long |
| Upfront investment | Low to medium | Low to medium | High |
| Recurring cost | Subscription, apps and fees | Hosting, paid plugins and maintenance | Server and maintenance |
| Technical maintenance | Minimal | Ongoing | Ongoing, by your team or agency |
| SEO control | Good, with fixed rules | Full | Full |
| Complex B2B rules | With apps and higher-tier plans | With plugins and development | Built in |
| Data ownership | On the platform, exportable | On your server | On your server |
What's specific about selling in Mexico
Whatever the platform, make sure it handles these points before you launch:
- Payments: credit and debit cards, interest-free installments, cash at convenience stores such as OXXO, and SPEI bank transfers (Mexico's instant interbank transfer system). We cover it in detail in online payments in Mexico.
- CFDI 4.0 invoicing: your business customers will ask for a CFDI, the official electronic invoice required by Mexico's tax authority (SAT). It can be handled with apps, plugins or an integration such as MonkeyFactura; we explain it in automatic CFDI invoicing.
- Shipping: rates from national carriers and same-day local delivery in your city. In La Laguna, many stores run their own delivery in Torreón, Gómez Palacio and Lerdo.
- WhatsApp: a visible button and order updates over WhatsApp, because that's where Mexican shoppers ask questions before they buy.
What pushes the cost up or down
- Number of products and variants, and whether photos and product details have to be loaded from scratch.
- Design: an adapted theme versus a fully custom design.
- Integrations: ERP, point of sale, invoicing, carriers, CRM.
- Business rules: per-customer pricing, wholesale, subscriptions, quotes.
- Migration from a previous store with customers, orders and SEO redirects.
- Maintenance: who updates, backs up and monitors the store after launch, and how often.
For a no-obligation estimate, use the website cost estimator.
Five questions to decide in an afternoon
- Who will run the store day to day? If it's someone without a technical background, Shopify reduces mistakes.
- Is your price the same for everyone? If not, consider an extended WooCommerce build or a custom store.
- Where does your inventory live? If it's in a point-of-sale system or ERP, the integration determines the platform.
- How important is content to selling? Lots of content tips the scale toward WordPress.
- How many years do you plan to use the store without rebuilding it? The more years and the more particular your needs, the more sense it makes to invest in something you own.
Two real-world decisions
A specialty coffee brand selling bags and subscriptions across Mexico chose an optimized store with online payments, nationwide shipping and easy reordering; see the coffee e-commerce case study. By contrast, an industrial distributor with thousands of parts and per-customer pricing needed a catalog connected to its inventory and a quote workflow, something that didn't fit a template; it's in the industrial distributor case study.
If your business is in La Laguna, take a look at our online stores in Torreón service; if not, our e-commerce service. And before choosing a platform, review the list of must-have online store features.






